About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides42878-
Paelopatides42879LSM1
Paelopatides42880CALCYPHOSIN
Paelopatides42881UV EXCISION REPAIR PROTEIN RAD23
Paelopatides42882PROTEIN CBG26694
Paelopatides42883-
Paelopatides42884-
Paelopatides42885-
Paelopatides42886N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Paelopatides42887N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Paelopatides42888ROPPORIN-1-LIKE PROTEIN
Paelopatides42889-
Paelopatides42890TRANSPOSON
Paelopatides42891FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides42892PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides42893ENDONUCLEASE-RELATED
Paelopatides42894ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides42897-
Paelopatides42898FERM DOMAIN CONTAINING PROTEIN
Paelopatides42899-
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