About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides42941-
Paelopatides42942UBIQUITIN
Paelopatides42943PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides42944BUCENTAUR RELATED
Paelopatides42945REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides42946-
Paelopatides42947SIMILAR TO CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (CHD-1)
Paelopatides42948-
Paelopatides42949ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides42950-
Paelopatides42951ASPARAGINE SYNTHETASE
Paelopatides42952-
Paelopatides42953CYTOKINE RECEPTOR
Paelopatides42954CYTOKINE RECEPTOR
Paelopatides42955ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides42956CYTOKINE RECEPTOR
Paelopatides42957REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides42958ADHESION G-PROTEIN COUPLED RECEPTOR V1
Paelopatides42959STAR-RELATED LIPID TRANSFER PROTEIN 9
Paelopatides42960-
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