About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43359PROTEIN CBG26694
Paelopatides43360PROTEIN CBG26694
Paelopatides43361TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides43362ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43363-
Paelopatides43364N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
Paelopatides43365METALLOPROTEASE
Paelopatides43366METALLOPROTEASE
Paelopatides43367-
Paelopatides43368PRE-MRNA-SPLICING FACTOR ISY1
Paelopatides43369PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43370RETROTRANSPOSON
Paelopatides43371RETROTRANSPOSON
Paelopatides43372RAS-RELATED PROTEIN RAB
Paelopatides43373-
Paelopatides43374GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD
Paelopatides43375-
Paelopatides43376ENZYMATIC POLYPROTEIN-RELATED
Paelopatides43377ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides43378UBIQUITIN-ACTIVATING ENZYME E1
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