About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43318ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides43319TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE
Paelopatides43320TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE
Paelopatides43322SLEI FAMILY PROTEIN
Paelopatides43323-
Paelopatides43324-
Paelopatides43325MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
Paelopatides43326PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides43327RAS-RELATED PROTEIN RAB
Paelopatides43328-
Paelopatides43329DYNEIN LIGHT INTERMEDIATE CHAIN
Paelopatides43330REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43331ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides43332CYTOCHROME P450 FAMILY 4
Paelopatides43333-
Paelopatides43334PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR
Paelopatides43335PROTEIN CBG26694
Paelopatides43336-
Paelopatides43337-
Paelopatides43338BUCENTAUR RELATED
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