About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43234CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides43235CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides43236TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides4323740S RIBOSOMAL PROTEIN S7
Paelopatides43238RIBONUCLEASE H1
Paelopatides43239FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43240PROTEIN CBG03580
Paelopatides43241-
Paelopatides43242CCR4-NOT TRANSCRIPTION COMPLEX RELATED
Paelopatides43243SODIUM CHANNEL MODIFIER 1
Paelopatides43244-
Paelopatides43245-
Paelopatides43246-
Paelopatides43247REVERSE TRANSCRIPTASES
Paelopatides43248-
Paelopatides43249CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43250ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43251REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43252MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Paelopatides43253-
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