About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43254-
Paelopatides43255MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Paelopatides43256-
Paelopatides43257CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43258NG5
Paelopatides43259GTP-BINDING
Paelopatides43260OXYSTEROL-BINDING PROTEIN-RELATED
Paelopatides43262POL PROTEIN
Paelopatides43263ORGANIC ANION TRANSPORTER
Paelopatides43264-
Paelopatides43265DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED
Paelopatides43266AGAP002036-PA
Paelopatides43267-
Paelopatides43268CALPAIN
Paelopatides43269ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43270CHAPERONIN
Paelopatides43271-
Paelopatides43272OS05G0310600 PROTEIN
Paelopatides43273OS05G0310600 PROTEIN
Paelopatides43274N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
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