About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43615-
Paelopatides43616MULTICOPPER OXIDASE-RELATED
Paelopatides43617-
Paelopatides43618LANC-LIKE PROTEIN
Paelopatides43619N-MYRISTOYL TRANSFERASE
Paelopatides43620UNCHARACTERIZED
Paelopatides43621DEPHOSPHO-COA KINASE-RELATED
Paelopatides436223-HYDROXYACYL-COA DEHYROGENASE
Paelopatides43623LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides43624LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides43625LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides43626ACYL-COA-BINDING PROTEIN, ACBP
Paelopatides43627-
Paelopatides43628NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING]
Paelopatides43630GLYCOGENIN SUBFAMILY MEMBER
Paelopatides43631-
Paelopatides43632FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43633-
Paelopatides43634UNCHARACTERIZED
Paelopatides43637TEKTIN
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