About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43678-
Paelopatides43679L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides43680FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43681FIBRINOGEN ALPHA CHAIN
Paelopatides43682FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43683-
Paelopatides43684SI:CH211-262H13.3-RELATED-RELATED
Paelopatides43685TRANSPOSON
Paelopatides43686EXPRESSED PROTEIN
Paelopatides43687OPSIN
Paelopatides43688ENZYMATIC POLYPROTEIN-RELATED
Paelopatides43689ENZYMATIC POLYPROTEIN-RELATED
Paelopatides43690MONOCARBOXYLATE TRANSPORTER
Paelopatides43691-
Paelopatides43692GNAT FAMILY N-ACETYLTRANSFERASE
Paelopatides43693PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
Paelopatides43694INHIBITOR OF APOPTOSIS
Paelopatides43695ORGANIC ANION TRANSPORTER
Paelopatides43696TRANSPOSABLE ELEMENT-RELATED
Paelopatides43697NG5
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