About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44029CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44030ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides44031PROPERDIN
Paelopatides44032-
Paelopatides44033PROPERDIN
Paelopatides44034PROTEIN CBG26694
Paelopatides44035DNA HELICASE RECQ FAMILY MEMBER
Paelopatides44036-
Paelopatides44037PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides44038PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides44039NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides44040-
Paelopatides44041-
Paelopatides44042PEROXISOMAL BIOGENESIS FACTOR 19
Paelopatides44043-
Paelopatides44044PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides44045-
Paelopatides44046E3 UBIQUITIN-PROTEIN LIGASE TTC3
Paelopatides44047-
Paelopatides44048PROTEIN CBG26694
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