About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44049TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides44050NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides44051ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides44052ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides44053-
Paelopatides44054-
Paelopatides44055-
Paelopatides44056EPM2A-INTERACTING PROTEIN 1
Paelopatides44057REVERSE TRANSCRIPTASES
Paelopatides44058BUCENTAUR RELATED
Paelopatides44059ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44060RING FINGER PROTEIN 31-RELATED
Paelopatides44061MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides44062T-BOX PROTEIN-RELATED
Paelopatides44063SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides44064-
Paelopatides44065FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44066L-CYSTEINE DESULFHYDRASE
Paelopatides44067BAND 7 PROTEIN-RELATED
Paelopatides44068RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
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