About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43988CRUMBS FAMILY MEMBER
Paelopatides43989-
Paelopatides43990COILIN
Paelopatides43991KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Paelopatides43992-
Paelopatides43993REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43994PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides43995-
Paelopatides43996PROTEIN ODR-4 HOMOLOG
Paelopatides43997PROTEIN ODR-4 HOMOLOG
Paelopatides43998INTEGRATOR COMPLEX SUBUNIT 9
Paelopatides43999THIAMIN PYROPHOSPHOKINASE
Paelopatides44000THIAMIN PYROPHOSPHOKINASE
Paelopatides44001METALLOPROTEASE TLDD
Paelopatides44002UNCHARACTERIZED
Paelopatides44003DYNEIN LIGHT CHAIN ROADBLOCK
Paelopatides44004DYNEIN LIGHT CHAIN ROADBLOCK
Paelopatides44005VACUOLAR ATP SYNTHASE SUBUNIT AC39
Paelopatides44006ADENOSYLHOMOCYSTEINASE
Paelopatides44007ADENOSYLHOMOCYSTEINASE
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