About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43960PROTEIN CBG26694
Paelopatides43961ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43962-
Paelopatides43963PROTEIN CBG26694
Paelopatides43964RETROTRANSPOSON
Paelopatides43965RETROTRANSPOSON
Paelopatides43966PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43968-
Paelopatides43976DYNEIN HEAVY CHAIN FAMILY PROTEIN
Paelopatides43977ACYLTRANSFERASE
Paelopatides43978ACYLTRANSFERASE
Paelopatides43979-
Paelopatides43980TRANSLATION INITIATION FACTOR-RELATED
Paelopatides43981-
Paelopatides4398239S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL
Paelopatides43983YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN
Paelopatides43984FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides43985-
Paelopatides43986XANTHINE DEHYDROGENASE
Paelopatides43987DNA POLYMERASE EPSILON SUBUNIT B
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