About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44110PROTEIN CBG26694
Paelopatides44111PROTEIN CBG26694
Paelopatides44112PROTEIN CBG26694
Paelopatides44113ANTI-SILENCING PROTEIN 1
Paelopatides44114DYNEIN INTERMEDIATE CHAIN
Paelopatides44115CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
Paelopatides44116REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44117VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21
Paelopatides44118ZINC/IRON TRANSPORTER
Paelopatides44119ZINC/IRON TRANSPORTER
Paelopatides44120-
Paelopatides44121E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
Paelopatides44122RE38146P
Paelopatides44123G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides44124-
Paelopatides44125G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Paelopatides44126SELENOPROTEIN O
Paelopatides44127SELENOPROTEIN O
Paelopatides44128PROTEIN ADENYLYLTRANSFERASE SELO, MITOCHONDRIAL
Paelopatides44129-
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