About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44740-
Paelopatides44741NGD5/OSM-6/IFT52
Paelopatides44742-
Paelopatides44743PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides44744-
Paelopatides44745INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides44746SHC TRANSFORMING PROTEIN
Paelopatides44747SHC TRANSFORMING PROTEIN
Paelopatides44748ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44749REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44750ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides44751-
Paelopatides44752OS05G0424000 PROTEIN-RELATED
Paelopatides44753CARNITINE O-ACYLTRANSFERASE
Paelopatides44754-
Paelopatides44755BCL-2 RELATED
Paelopatides44756SPLICING FACTOR YJU2
Paelopatides44757HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides44758BONUS, ISOFORM C-RELATED
Paelopatides44759SCAVENGER RECEPTOR CLASS F
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