About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44760-
Paelopatides44761ADENYLOSUCCINATE SYNTHETASE
Paelopatides44762ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides44763-
Paelopatides44765-
Paelopatides44766PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
Paelopatides44767PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
Paelopatides44768L-GULONOLACTONE OXIDASE
Paelopatides44769L-GULONOLACTONE OXIDASE
Paelopatides44770-
Paelopatides44771CYTOCHROME P450 FAMILY 1
Paelopatides44772HEME-BINDING MONOOXYGENASE FAMILY
Paelopatides44773-
Paelopatides44774GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides44775REVERSE TRANSCRIPTASES
Paelopatides44776ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides44777ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides44778PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides44779RETROTRANSPOSON
Paelopatides44780RETROTRANSPOSON
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