About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44695BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides44696OS06G0237300 PROTEIN
Paelopatides44697-
Paelopatides44698CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
Paelopatides44699-
Paelopatides44700-
Paelopatides44701-
Paelopatides44702UPF0193 PROTEIN EVG1
Paelopatides44703ALCOHOL DEHYDROGENASE 1-RELATED
Paelopatides44704ALCOHOL DEHYDROGENASE 1-RELATED
Paelopatides44705ENZYMATIC POLYPROTEIN-RELATED
Paelopatides44706TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides44707PKSB
Paelopatides44708-
Paelopatides44709RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
Paelopatides44710RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Paelopatides44711RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Paelopatides44712-
Paelopatides44713REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44714PKSB
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