About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44674OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides44675SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides44676SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides44677PROTEIN CBG26694
Paelopatides44678UNCHARACTERIZED
Paelopatides44679NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides44680SLR5058 PROTEIN
Paelopatides44681NETRIN RECEPTOR UNC5
Paelopatides44682CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44683-
Paelopatides44684REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44685-
Paelopatides44686-
Paelopatides44687CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44688RING FINGER PROTEIN 31-RELATED
Paelopatides44689BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
Paelopatides44690PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL
Paelopatides44691CYSTEINE DESULFURASE
Paelopatides44692NUCLEAR MOVEMENT PROTEIN NUDC
Paelopatides44694-
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