About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44653DNA REPAIR PROTEIN REV1
Paelopatides44654-
Paelopatides44655-
Paelopatides44656-
Paelopatides44657SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides44658CULLIN
Paelopatides44659-
Paelopatides44660PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides44661-
Paelopatides44662TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
Paelopatides44663SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT
Paelopatides44664GLUTATHIONE REDUCTASE
Paelopatides44665-
Paelopatides44666REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44667REVERSE TRANSCRIPTASE
Paelopatides44668FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44669FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44671EPM2A-INTERACTING PROTEIN 1
Paelopatides44672PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides44673RETROTRANSPOSON
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