About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44608-
Paelopatides44609DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED
Paelopatides44610ENDONUCLEASE-RELATED
Paelopatides44611ENZYMATIC POLYPROTEIN-RELATED
Paelopatides44612TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides44613PARANEOPLASTIC ANTIGEN
Paelopatides44614-
Paelopatides44615GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides44616-
Paelopatides44617EAP30 SUBUNIT OF ELL COMPLEX
Paelopatides44618NOTCH LIGAND FAMILY MEMBER
Paelopatides44619NOTCH LIGAND FAMILY MEMBER
Paelopatides44620REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44621THAP DOMAIN PROTEIN
Paelopatides44622-
Paelopatides44623PROTEIN CBG26694
Paelopatides44624AGAP007537-PB
Paelopatides44625NETRIN RECEPTOR UNC5
Paelopatides44626-
Paelopatides44631MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT
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