About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45335DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
Paelopatides45336HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides45337-
Paelopatides453385'-NUCLEOTIDASE DOMAIN-CONTAINING
Paelopatides45339ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45340UNCHARACTERIZED
Paelopatides45341-
Paelopatides45342SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Paelopatides45343FACIOGENITAL DYSPLASIA PROTEIN
Paelopatides45344FACIOGENITAL DYSPLASIA PROTEIN
Paelopatides45345SI:CH211-196P9.1-RELATED
Paelopatides45346NUCLEAR FUSION PROTEIN FUS2
Paelopatides45347-
Paelopatides45348-
Paelopatides45349REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45350HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER
Paelopatides45351HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER
Paelopatides45352HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER
Paelopatides45353UNCHARACTERIZED
Paelopatides45354-
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