About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45272-
Paelopatides45273NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides45274AGL056WP
Paelopatides45275TYROSINE-PROTEIN KINASE
Paelopatides45276-
Paelopatides45277NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides45278PROTEIN CBG26694
Paelopatides45279-
Paelopatides45280NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides45281-
Paelopatides45282-
Paelopatides45283GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides45284-
Paelopatides45285UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides45286DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
Paelopatides45287ETS
Paelopatides45288-
Paelopatides45289FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45290MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1
Paelopatides45291PORCUPINE
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