About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45395-
Paelopatides45396INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45397UNCHARACTERIZED
Paelopatides45398-
Paelopatides45399TRANSIENT RECEPTOR POTENTIAL CHANNEL
Paelopatides45400-
Paelopatides45401PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides45402ARGININE OR CREATINE KINASE
Paelopatides45403ENDONUCLEASE
Paelopatides45404REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides4540526S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9
Paelopatides45406-
Paelopatides45407FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45408FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45409FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45410PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides45411MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Paelopatides45412ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides45413TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides45414REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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