About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45230-
Paelopatides45231AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides45232-
Paelopatides45233POL PROTEIN
Paelopatides45234ENDONUCLEASE-RELATED
Paelopatides45235ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45236COMM DOMAIN-CONTAINING PROTEIN 3
Paelopatides45237REVERSE TRANSCRIPTASES
Paelopatides45238GTP-BINDING
Paelopatides45239-
Paelopatides45240REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45241GTP-BINDING
Paelopatides45242GTP-BINDING
Paelopatides45243-
Paelopatides45244HEMOPEXIN DOMAIN-CONTAINING PROTEIN
Paelopatides45245-
Paelopatides45246ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides45247-
Paelopatides45248ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides45249PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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