About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45250N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides45251SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45252TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides45253REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45254ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Paelopatides45255-
Paelopatides45256REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45257HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides45258RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides45259COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides45260-
Paelopatides45261ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45262ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides45263PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides45266TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER
Paelopatides45267NETRIN RECEPTOR UNC5
Paelopatides45268GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
Paelopatides45269GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
Paelopatides45270-
Paelopatides45271LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
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