About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45457RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides45458NETRIN RECEPTOR UNC5
Paelopatides45459PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides45460PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides45461RETROTRANSPOSON
Paelopatides45462ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides45463-
Paelopatides45464-
Paelopatides45465ENZYMATIC POLYPROTEIN-RELATED
Paelopatides45466-
Paelopatides45467REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45468NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides45469-
Paelopatides45470ACYL-COA DEHYDROGENASE
Paelopatides45471-
Paelopatides45472T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides45473FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45474-
Paelopatides45475PARANEOPLASTIC ANTIGEN
Paelopatides45476PROTEIN CBG26694
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