About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45674-
Paelopatides45675FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45676-
Paelopatides45677-
Paelopatides45678-
Paelopatides45679-
Paelopatides45680-
Paelopatides45681BUCENTAUR RELATED
Paelopatides45682REVERSE TRANSCRIPTASES
Paelopatides45683CYTOCHROME P450 FAMILY 3
Paelopatides45684-
Paelopatides45685UBIQUITIN THIOLESTERASE PROTEIN OTUB
Paelopatides45686RRM DOMAIN-CONTAINING PROTEIN
Paelopatides45687REVERSE TRANSCRIPTASES
Paelopatides45688REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45689PROTEIN CBG26694
Paelopatides45690PROTEIN CBG26694
Paelopatides45691THADA/DEATH RECEPTOR INTERACTING PROTEIN
Paelopatides45692-
Paelopatides45693FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
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