About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45564PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides45565POL PROTEIN
Paelopatides45566-
Paelopatides45567CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45568CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides45569ALPHA-TECTORIN-RELATED
Paelopatides45570IP13529P
Paelopatides45571-
Paelopatides45572GAMMA GLUTAMYL TRANSPEPTIDASE
Paelopatides45573PHOSPHOENOLPYRUVATE CARBOXYKINASE
Paelopatides45574N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
Paelopatides45575UPF0041 BRAIN PROTEIN 44-RELATED
Paelopatides45576ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
Paelopatides45577ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
Paelopatides45578-
Paelopatides45579GLUTATHIONE S-TRANSFERASE
Paelopatides45580GLUTATHIONE S-TRANSFERASE
Paelopatides45581-
Paelopatides45582FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45583CXC DOMAIN-CONTAINING PROTEIN-RELATED
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