About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45543PROTEIN ARGININE N-METHYLTRANSFERASE
Paelopatides45544-
Paelopatides45545NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides45546PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides45547-
Paelopatides45548REVERSE TRANSCRIPTASES
Paelopatides45549PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides45550REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45551REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45552PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides45553CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides45554-
Paelopatides45555NOTCH LIGAND FAMILY MEMBER
Paelopatides45556PROTEIN CBG26694
Paelopatides45557FI04643P-RELATED
Paelopatides45558ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45559ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45560BONUS, ISOFORM C-RELATED
Paelopatides45561RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides45563DNA REPAIR/RNA PROCESSING CPSF FAMILY
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