Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_12363-7.7 | |
| Bpl_scaf_12363-8.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_12363-8.4 | |
| Bpl_scaf_12363-8.6 | |
| Bpl_scaf_12363-9.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_12363-9.16 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_12363-9.26 | |
| Bpl_scaf_12363-9.27 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_12363-9.28 | |
| Bpl_scaf_12363-9.29 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_12363-9.30 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_12363-9.31 | |
| Bpl_scaf_12364-0.3 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_12371-0.4 | PROTEIN G1-LIKE2 |
| Bpl_scaf_12371-0.6 | CHITINASE |
| Bpl_scaf_12371-0.7 | CHONDROITIN SYNTHASE |
| Bpl_scaf_12371-1.8 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_12371-1.9 | 26S PROTEASOME REGULATORY SUBUNIT |
| Bpl_scaf_12371-2.2 | |
| Bpl_scaf_12371-2.4 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_12374-1.1 | |
| Bpl_scaf_12374-1.11 | AMP DEAMINASE |
| Bpl_scaf_12374-1.21 | |
| Bpl_scaf_12374-10.14 | F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA |
| Bpl_scaf_12374-10.28 | NF-KAPPA-B ESSENTIAL MODULATOR |
| Bpl_scaf_12374-10.29 | |
| Bpl_scaf_12374-10.30 | NICOLIN 1 |
| Bpl_scaf_12374-10.32 | PUTATIVE-RELATED |
| Bpl_scaf_12374-10.7 | DUAL SPECIFICITY PROTEIN KINASE |
| Bpl_scaf_12374-2.11 | VITELLINE MEMBRANE OUTER LAYER PROTEIN I-RELATED |
| Bpl_scaf_12374-2.26 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_12374-2.4 | |
| Bpl_scaf_12374-2.8 | |
| Bpl_scaf_12374-3.4 | TETRASPANIN |
| Bpl_scaf_12374-4.7 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| Bpl_scaf_12374-5.10 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| Bpl_scaf_12374-5.13 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Bpl_scaf_12374-5.15 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Bpl_scaf_12374-5.16 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Bpl_scaf_12374-6.1 | SERINE PROTEASE INHIBITOR, SERPIN |
| Bpl_scaf_12374-6.2 | SERINE PROTEASE INHIBITOR, SERPIN |
| Bpl_scaf_12374-6.3 | SERINE PROTEASE INHIBITOR, SERPIN |
| Bpl_scaf_12374-6.7 | SERINE PROTEASE INHIBITOR, SERPIN |
| Bpl_scaf_12374-7.8 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_12374-8.16 | CAMK FAMILY PROTEIN KINASE |
| Bpl_scaf_12374-8.7 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_12374-9.20 | DAP3-BINDING CELL DEATH ENHANCER 1 |
| Bpl_scaf_12374-9.21 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Bpl_scaf_12374-9.22 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N |
| Bpl_scaf_12376-0.0 |
