About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_12377-0.0CEREBELLIN-RELATED
Bpl_scaf_12378-0.2ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Bpl_scaf_12379-0.2DNA LIGASE 1/3 FAMILY MEMBER
Bpl_scaf_12384-0.4N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE
Bpl_scaf_12384-0.5DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_12384-1.8ALSIN HOMOLOG
Bpl_scaf_12384-2.0ARRESTIN DOMAIN CONTAINING PROTEIN
Bpl_scaf_12384-2.15KINESIN-RELATED
Bpl_scaf_12384-2.21
Bpl_scaf_12384-2.5
Bpl_scaf_1240-1.10DNA LIGASE 1/3 FAMILY MEMBER
Bpl_scaf_1240-1.37INNER MEMBRANE TRANSPORT PROTEIN YAJR
Bpl_scaf_1240-1.38WNT RELATED
Bpl_scaf_1240-1.9D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Bpl_scaf_12455-0.1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_12455-0.2PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_12455-0.3L1 TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_12455-0.4PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_12456-0.5UNCHARACTERIZED
Bpl_scaf_12459-0.11PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
Bpl_scaf_12459-0.2THYROTROPH EMBRYONIC FACTOR RELATED
Bpl_scaf_12460-0.3
Bpl_scaf_12462-0.16
Bpl_scaf_12462-0.17RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
Bpl_scaf_12462-0.20
Bpl_scaf_12462-0.27
Bpl_scaf_12462-0.29GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
Bpl_scaf_12463-0.13CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_12463-0.14
Bpl_scaf_12463-0.17
Bpl_scaf_12464-0.3UNCHARACTERIZED
Bpl_scaf_12465-0.11
Bpl_scaf_12465-0.12
Bpl_scaf_12465-0.13WD REPEAT CONTAINING PROTEIN 3 WDR3
Bpl_scaf_12466-0.1
Bpl_scaf_12466-0.13
Bpl_scaf_12466-0.15HYDROLASE
Bpl_scaf_12466-0.16SULFOTRANSFERASE SULT
Bpl_scaf_12466-0.46-PHOSPHOGLUCONOLACTONASE
Bpl_scaf_12467-0.0
Bpl_scaf_12467-1.3
Bpl_scaf_12467-1.4
Bpl_scaf_12467-1.6
Bpl_scaf_12468-0.2
Bpl_scaf_12468-0.5
Bpl_scaf_12469-0.0
Bpl_scaf_12470-0.3MUCIN 4-RELATED
Bpl_scaf_12471-0.0
Bpl_scaf_12473-0.0
Bpl_scaf_12477-0.1INHIBITOR OF APOPTOSIS
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