About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_12781-0.18
Bpl_scaf_12781-0.19
Bpl_scaf_12781-0.20
Bpl_scaf_12788-0.4
Bpl_scaf_1280-1.3SCAVENGER RECEPTOR CLASS F
Bpl_scaf_1280-2.5
Bpl_scaf_12807-0.3
Bpl_scaf_12807-0.4PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Bpl_scaf_12807-0.8
Bpl_scaf_1281-0.1
Bpl_scaf_12818-0.4OTU DOMAIN CONTAINING PROTEIN
Bpl_scaf_12819-0.2UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE
Bpl_scaf_12819-1.17DNA HELICASE RECQ FAMILY MEMBER
Bpl_scaf_12819-1.18STEROL REGULATORY ELEMENT-BINDING PROTEIN
Bpl_scaf_12819-1.32
Bpl_scaf_12819-1.34SEQUESTOSOME 1-RELATED
Bpl_scaf_12819-1.35
Bpl_scaf_12819-3.9FURRY-RELATED
Bpl_scaf_12819-4.7
Bpl_scaf_12819-4.9RNA RECOGNITION RRM/RNP DOMAIN
Bpl_scaf_12819-5.17RAN GTPASE-ACTIVATING PROTEIN 1
Bpl_scaf_12819-5.19HUEL-CATION TRANSPORTER
Bpl_scaf_12819-5.22LEUCINE RICH REPEAT FAMILY PROTEIN
Bpl_scaf_12819-5.23HUEL-CATION TRANSPORTER
Bpl_scaf_12819-5.34PROTON CHANNEL OTOP
Bpl_scaf_12824-0.27PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4
Bpl_scaf_12824-0.6PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4
Bpl_scaf_1283-0.0
Bpl_scaf_1284-0.4
Bpl_scaf_12849-0.7
Bpl_scaf_12849-0.8
Bpl_scaf_12857-0.1
Bpl_scaf_12857-0.6
Bpl_scaf_12857-0.7
Bpl_scaf_1287-0.0
Bpl_scaf_12870-0.10INTEGRIN ALPHA
Bpl_scaf_12870-0.12BONUS, ISOFORM C-RELATED
Bpl_scaf_12870-0.4
Bpl_scaf_12878-0.0
Bpl_scaf_12878-0.4DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED
Bpl_scaf_12886-0.10
Bpl_scaf_12886-0.12FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN
Bpl_scaf_12886-0.13MITOCHONDRIAL GLYCINE TRANSPORTER
Bpl_scaf_12886-0.7HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_12887-0.15ZINC FINGER PROTEIN 142
Bpl_scaf_12887-0.51EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
Bpl_scaf_12887-0.52UNCHARACTERIZED
Bpl_scaf_12887-0.53
Bpl_scaf_12887-0.54
Bpl_scaf_12887-0.55PROPERDIN
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