About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_12887-0.56CONTACTIN 5
Bpl_scaf_12897-0.0
Bpl_scaf_12897-0.1
Bpl_scaf_12909-0.1LEUCYL-TRNA SYNTHETASE
Bpl_scaf_12909-0.3CYTOCHROME P450 FAMILY 4
Bpl_scaf_12909-0.4
Bpl_scaf_12909-0.7CYTOCHROME P450 508A4-RELATED
Bpl_scaf_1291-0.2VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Bpl_scaf_12920-0.11
Bpl_scaf_12920-0.12
Bpl_scaf_12920-0.16THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
Bpl_scaf_12920-0.18
Bpl_scaf_12920-0.19
Bpl_scaf_12920-0.26
Bpl_scaf_12920-0.36UBIQUITIN-CONJUGATING ENZYME E2
Bpl_scaf_12934-0.18
Bpl_scaf_12934-0.19
Bpl_scaf_12934-0.26ALCOHOL DEHYDROGENASE
Bpl_scaf_12934-0.4
Bpl_scaf_12934-0.9
Bpl_scaf_12940-0.0
Bpl_scaf_12940-0.33
Bpl_scaf_12940-0.34AGAP001705-PA
Bpl_scaf_12940-0.35AGAP001705-PA
Bpl_scaf_12940-0.9ARMADILLO-TYPE FOLD-RELATED
Bpl_scaf_12948-0.18EGF-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_12948-0.7
Bpl_scaf_1295-0.0
Bpl_scaf_1295-0.1
Bpl_scaf_1295-1.6
Bpl_scaf_1295-1.9MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_1295-2.3E3 UBIQUITIN-PROTEIN LIGASE SPL2
Bpl_scaf_1295-2.4GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
Bpl_scaf_12959-0.18CEREBELLIN-RELATED
Bpl_scaf_12959-0.3
Bpl_scaf_12959-0.8
Bpl_scaf_12959-0.9
Bpl_scaf_12973-0.18TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Bpl_scaf_12973-0.19MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_12973-0.20POLYCOMB GROUP PROTEIN
Bpl_scaf_12973-0.27
Bpl_scaf_12973-0.28TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Bpl_scaf_1299-0.0
Bpl_scaf_12998-0.15SIDESTEP PROTEIN
Bpl_scaf_12998-0.16IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_12998-0.17
Bpl_scaf_12998-1.16SIDESTEP PROTEIN
Bpl_scaf_13-0.1PUTATIVE-RELATED
Bpl_scaf_1301-0.0
Bpl_scaf_13019-0.0LORICRIN
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