About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06801CENTROSOMAL PROTEIN 2
Paelopatides06802-
Paelopatides06803REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06804ZINC FINGER PROTEIN
Paelopatides06805GERANYLGERANYL PYROPHOSPHATE SYNTHASE
Paelopatides06806-
Paelopatides06807PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides06808-
Paelopatides06809ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides06810ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06811MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
Paelopatides06812REVERSE TRANSCRIPTASE
Paelopatides06813ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06814ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06815-
Paelopatides06816-
Paelopatides06817L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06818PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06819ZINC FINGER PROTEIN ZIC AND GLI
Paelopatides06820NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
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