About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06862ACTIN
Paelopatides06863-
Paelopatides06864ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides06865-
Paelopatides06866-
Paelopatides06867-
Paelopatides06868PROTEIN CBG26694
Paelopatides06869POL PROTEIN
Paelopatides06870-
Paelopatides06871AMINE OXIDASE
Paelopatides06872RETROTRANSPOSON
Paelopatides06873CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides06874PROTEIN CBG26694
Paelopatides06875EPM2A-INTERACTING PROTEIN 1
Paelopatides06876METALLOPROTEASE
Paelopatides06877-
Paelopatides06878RBPJ-INTERACTING AND TUBULIN-ASSOCIATED PROTEIN 1
Paelopatides06879-
Paelopatides06880REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06881-
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