About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07517-
Paelopatides07520-
Paelopatides07521-
Paelopatides07522POL PROTEIN
Paelopatides07523-
Paelopatides07524-
Paelopatides07525-
Paelopatides07526-
Paelopatides07527-
Paelopatides07528TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides07529-
Paelopatides07530OPSIN
Paelopatides07531ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14
Paelopatides07532ELONGATION FACTOR TU-RELATED
Paelopatides07533PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides07534ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26
Paelopatides07535PROTEIN CBG26694
Paelopatides07536REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07537ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07538-
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