About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07582PROTEIN CBG12474
Paelopatides07583EXS-RELATED PROTEIN
Paelopatides07584PROTEIN CBG12474
Paelopatides07585TENASCIN
Paelopatides07586PROTEIN CBG26694
Paelopatides07587L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides07588L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides07589HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED
Paelopatides07590TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides07591-
Paelopatides07592-
Paelopatides07593HIGH MOBILITY GROUP PROTEIN DSP1
Paelopatides07594NXPE FAMILY MEMBER
Paelopatides07595IP13529P
Paelopatides07596-
Paelopatides07597SORTING NEXIN
Paelopatides07598-
Paelopatides07599TRANSPOSABLE ELEMENT-RELATED
Paelopatides07600-
Paelopatides07601RETROTRANSPOSON
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