About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07434-
Paelopatides07435-
Paelopatides07436RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
Paelopatides07437RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
Paelopatides07438ENDONUCLEASE-RELATED
Paelopatides07439DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides07440REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07441TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides07442PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides07443PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides07444PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides07445-
Paelopatides07446UNCHARACTERIZED
Paelopatides07447-
Paelopatides07448BICOID-INTERACTING PROTEIN RELATED
Paelopatides07449BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides07450ATP-BINDING TRANSPORT PROTEIN-RELATED
Paelopatides07451-
Paelopatides07452HERMANSKY-PUDLAK SYNDROME 3 PROTEIN
Paelopatides07454SOLUTE CARRIER FAMILY 13 MEMBER
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