About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08141PROTEIN ZWILCH HOMOLOG
Paelopatides08142PROTEIN ZWILCH HOMOLOG
Paelopatides08143UBIQUITIN
Paelopatides08144UBIQUITIN
Paelopatides08145UBIQUITIN
Paelopatides08146-
Paelopatides08147MATRIX METALLOPROTEINASE
Paelopatides08148-
Paelopatides08149PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides08150APOLIPOPROTEIN L
Paelopatides08151REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08152-
Paelopatides08153-
Paelopatides08154PROTEIN CBG26694
Paelopatides08155ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08156ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08157-
Paelopatides08158REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08159OPSIN
Paelopatides08160-
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