About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08182-
Paelopatides08183-
Paelopatides08185-
Paelopatides08186ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08187ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides08188PROTEIN CBG26694
Paelopatides08189INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08190YIPPEE DOMAIN-CONTAINING PROTEIN
Paelopatides08191EPM2A-INTERACTING PROTEIN 1
Paelopatides08192EPM2A-INTERACTING PROTEIN 1
Paelopatides08193UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides08196UNCHARACTERIZED
Paelopatides08197PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides08198ENDONUCLEASE III-LIKE PROTEIN 1
Paelopatides08199MATRIX METALLOPROTEINASE
Paelopatides08200TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides08201TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides08202PARANEOPLASTIC ANTIGEN
Paelopatides08203-
Paelopatides08204-
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