About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08059TYROSYL-TRNA SYNTHETASE
Paelopatides08060SPECKLE-TYPE POZ PROTEIN
Paelopatides08061-
Paelopatides08062ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS
Paelopatides08063-
Paelopatides08064BUCENTAUR RELATED
Paelopatides08065REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08066-
Paelopatides08067-
Paelopatides08068-
Paelopatides08069CYTOKINE RECEPTOR
Paelopatides08072REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08073ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08074ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides08075ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides08076SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides08077RAS-RELATED PROTEIN RAB
Paelopatides08078ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08079ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1
Paelopatides08080ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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