About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08205BUCENTAUR RELATED
Paelopatides08206REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08207-
Paelopatides08208COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides08209-
Paelopatides08210PROTEIN CBG26694
Paelopatides08211CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Paelopatides08212TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides08213-
Paelopatides08214SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides08215-
Paelopatides08216SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Paelopatides08217-
Paelopatides08218-
Paelopatides08221GAG-RELATED PROTEIN
Paelopatides08222ENZYMATIC POLYPROTEIN-RELATED
Paelopatides08223NETRIN RECEPTOR UNC5
Paelopatides08224REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08225TUBULIN
Paelopatides08226CDC37-RELATED
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