About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08081-
Paelopatides08082PECANEX
Paelopatides08083DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED
Paelopatides08084REVERSE TRANSCRIPTASES
Paelopatides08085PROTEIN CBG16428
Paelopatides08086NUCLEOLAR PROTEIN 12
Paelopatides08087-
Paelopatides08088T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides08089TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides08090ENDONUCLEASE-RELATED
Paelopatides08091-
Paelopatides08092CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides08093-
Paelopatides08094MIS18-BINDING PROTEIN 1
Paelopatides08095-
Paelopatides08096BONUS, ISOFORM C-RELATED
Paelopatides08097REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08098-
Paelopatides08099NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides08100G PROTEIN-COUPLED RECEPTOR
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