About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08247GLUTATHIONE S-TRANSFERASE
Paelopatides08248-
Paelopatides08249DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides08250-
Paelopatides08251CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides08252REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08253-
Paelopatides08254ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides08255ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides08256MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO
Paelopatides08257ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides08258MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO
Paelopatides08259REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08260-
Paelopatides08261-
Paelopatides08262SAM DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08263SAM DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08264LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides08265ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08266PROTEIN CBG26694
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