About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08267PROTEIN CBG26694
Paelopatides08268PROTEIN CBG26694
Paelopatides08269ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08270-
Paelopatides08271ACYL-COA DEHYDROGENASE
Paelopatides08272-
Paelopatides08273CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides08274-
Paelopatides08275NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides08276-
Paelopatides08277REVERSE TRANSCRIPTASE
Paelopatides08278DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides08279PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides08280RETROTRANSPOSON
Paelopatides08281RETROTRANSPOSON
Paelopatides08282-
Paelopatides08283-
Paelopatides08284CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08285-
Paelopatides08286-
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