About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08227MELANOMA INHIBITORY ACTIVITY-RELATED
Paelopatides08228-
Paelopatides08229ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08230RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
Paelopatides08231BUCENTAUR RELATED
Paelopatides08232-
Paelopatides08233RETROTRANSPOSON
Paelopatides08234RETROTRANSPOSON
Paelopatides08235-
Paelopatides08236-
Paelopatides08237PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Paelopatides08238BUCENTAUR RELATED
Paelopatides08239REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides0824052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides08241-
Paelopatides08242UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN
Paelopatides08243MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides08244-
Paelopatides08245-
Paelopatides08246RAS-RELATED PROTEIN RAB
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