Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s051.g0051.t1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
Lsat_s051.g0052.t1 | CYCLINS |
Lsat_s051.g0053.t1 | EPIMERASE-RELATED |
Lsat_s051.g0054.t1 | EPIMERASE-RELATED |
Lsat_s051.g0055.t1 | UNCHARACTERIZED |
Lsat_s051.g0056.t1 | |
Lsat_s051.g0057.t1 | ZINC FINGER PROTEIN |
Lsat_s051.g0058.t1 | THROMBOSPONDIN TYPE I DOMAIN-CONTAINING 1 |
Lsat_s051.g0059.t1 | CHLORIDE CHANNEL PROTEIN |
Lsat_s051.g0060.t1 | GEO05313P1 |
Lsat_s051.g0061.t1 | PROTEIN INTURNED |
Lsat_s051.g0062.t1 | LIPOXYGENASE |
Lsat_s051.g0063.t1 | HSC70-INTERACTING PROTEIN |
Lsat_s051.g0064.t1 | TRANSMEMBRANE GTPASE FZO |
Lsat_s051.g0065.t1 | HSC70-INTERACTING PROTEIN |
Lsat_s051.g0066.t1 | XAA-PRO AMINOPEPTIDASE 3 |
Lsat_s051.g0067.t1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
Lsat_s051.g0068.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
Lsat_s051.g0069.t1 | MUCIN 4-RELATED |
Lsat_s051.g0070.t1 | MUCIN 4-RELATED |
Lsat_s051.g0071.t1 | |
Lsat_s051.g0072.t1 | MUCIN 4-RELATED |
Lsat_s051.g0073.t1 | MUCIN 4-RELATED |
Lsat_s051.g0074.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s051.g0075.t1 | |
Lsat_s051.g0076.t1 | |
Lsat_s051.g0077.t1 | |
Lsat_s051.g0078.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s051.g0079.t1 | |
Lsat_s051.g0080.t1 | CADHERIN-87A |
Lsat_s051.g0081.t1 | |
Lsat_s051.g0082.t1 | |
Lsat_s051.g0083.t1 | |
Lsat_s051.g0084.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
Lsat_s051.g0085.t1 | PASIFLORA 1, ISOFORM A-RELATED |
Lsat_s051.g0086.t1 | DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN |
Lsat_s051.g0087.t1 | |
Lsat_s051.g0088.t1 | BOMB/KIRA PROTEINS |
Lsat_s051.g0089.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Lsat_s051.g0090.t1 | TRANSMEMBRANE PROTEIN |
Lsat_s051.g0091.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Lsat_s051.g0092.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Lsat_s051.g0093.t1 | |
Lsat_s051.g0094.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Lsat_s051.g0095.t1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Lsat_s051.g0096.t1 | - |
Lsat_s051.g0097.t1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
Lsat_s051.g0098.t1 | TRANSFERASE, PUTATIVE-RELATED |
Lsat_s051.g0099.t1 | ANKYRIN REPEAT-CONTAINING |
Lsat_s051.g0100.t1 | MULTIDRUG RESISTANCE PROTEIN |