Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s052.g0026.t1 | ANILLIN/RHOTEKIN RTKN |
| Lsat_s052.g0027.t1 | T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL |
| Lsat_s052.g0028.t1 | |
| Lsat_s052.g0029.t1 | GMP SYNTHASE-RELATED |
| Lsat_s052.g0030.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Lsat_s052.g0031.t1 | |
| Lsat_s052.g0032.t1 | POLYCOMB GROUP PROTEIN |
| Lsat_s052.g0033.t1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Lsat_s052.g0034.t1 | CAMK FAMILY PROTEIN KINASE |
| Lsat_s052.g0035.t1 | YY1 ASSOCIATED PROTEIN-RELATED |
| Lsat_s052.g0036.t1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
| Lsat_s052.g0037.t1 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 |
| Lsat_s052.g0038.t1 | |
| Lsat_s052.g0039.t1 | PEROXISOME BIOGENESIS FACTOR 2 |
| Lsat_s052.g0040.t1 | |
| Lsat_s052.g0041.t1 | CENTROSOMAL PROTEIN 2 |
| Lsat_s052.g0042.t1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Lsat_s052.g0043.t1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Lsat_s052.g0044.t1 | |
| Lsat_s052.g0045.t1 | |
| Lsat_s052.g0046.t1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Lsat_s052.g0047.t1 | |
| Lsat_s052.g0048.t1 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
| Lsat_s052.g0049.t1 | PROGRAMMED CELL DEATH PROTEIN 5 |
| Lsat_s052.g0050.t1 | CYCLIN D1-BINDING PROTEIN 1 |
| Lsat_s052.g0051.t1 | POLY(A) RNA POLYMERASE |
| Lsat_s052.g0052.t1 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT |
| Lsat_s052.g0053.t1 | |
| Lsat_s052.g0054.t1 | RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 |
| Lsat_s052.g0055.t1 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 |
| Lsat_s052.g0056.t1 | |
| Lsat_s052.g0057.t1 | CARBOHYDRATE SULFOTRANSFERASE |
| Lsat_s052.g0058.t1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
| Lsat_s052.g0059.t1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
| Lsat_s052.g0060.t1 | MALE FERTILITY FACTOR KL5 |
| Lsat_s052.g0061.t1 | N-MYC DOWNSTREAM REGULATED |
| Lsat_s052.g0062.t1 | IST1 FAMILY MEMBER |
| Lsat_s052.g0063.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 |
| Lsat_s052.g0064.t1 | ATP-DEPENDENT PROTEASE |
| Lsat_s052.g0065.t1 | INOSITOL MONOPHOSPHATASE |
| Lsat_s052.g0066.t1 | |
| Lsat_s052.g0067.t1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Lsat_s052.g0068.t1 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL |
| Lsat_s052.g0069.t1 | RNA POLYMERASE II CTD PHOSPHATASE |
| Lsat_s052.g0070.t1 | CENTROMERE PROTEIN L |
| Lsat_s052.g0071.t1 | DEOXYNUCLEOSIDE KINASE |
| Lsat_s052.g0072.t1 | |
| Lsat_s052.g0073.t1 | |
| Lsat_s052.g0074.t1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 |
| Lsat_s052.g0075.t1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 24 |
