Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s051.g0151.t1 | |
Lsat_s051.g0152.t1 | |
Lsat_s051.g0153.t1 | |
Lsat_s051.g0154.t1 | |
Lsat_s051.g0155.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
Lsat_s051.g0156.t1 | |
Lsat_s051.g0157.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
Lsat_s051.g0158.t1 | |
Lsat_s051.g0159.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s051.g0160.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Lsat_s051.g0161.t1 | |
Lsat_s051.g0162.t1 | - |
Lsat_s051.g0163.t1 | OVOCHYMASE-RELATED |
Lsat_s051.g0164.t1 | CARRIER DOMAIN-CONTAINING PROTEIN |
Lsat_s051.g0165.t1 | |
Lsat_s051.g0166.t1 | VERY-LONG-CHAIN 3-OXOOACYL-COA REDUCTASE |
Lsat_s051.g0167.t1 | INHIBITOR OF GROWTH PROTEIN |
Lsat_s051.g0168.t1 | |
Lsat_s051.g0169.t1 | UNCHARACTERIZED |
Lsat_s051.g0170.t1 | |
Lsat_s051.g0171.t1 | CADHERIN-23 |
Lsat_s051.g0172.t1 | |
Lsat_s051.g0173.t1 | FAT ATYPICAL CADHERIN-RELATED |
Lsat_s051.g0174.t1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2 |
Lsat_s051.g0175.t1 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
Lsat_s052.g0001.t1 | GLR0591 PROTEIN |
Lsat_s052.g0002.t1 | LEUCINE ZIPPER PROTEIN 4-RELATED |
Lsat_s052.g0003.t1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
Lsat_s052.g0004.t1 | PROTEIN PHOSPHATASE |
Lsat_s052.g0005.t1 | |
Lsat_s052.g0006.t1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
Lsat_s052.g0007.t1 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
Lsat_s052.g0008.t1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Lsat_s052.g0009.t1 | ZINC FINGER PROTEIN |
Lsat_s052.g0010.t1 | ZINC FINGER PROTEIN |
Lsat_s052.g0011.t1 | UNCHARACTERIZED |
Lsat_s052.g0012.t1 | TRANSCRIPTION FACTOR 19 |
Lsat_s052.g0013.t1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
Lsat_s052.g0014.t1 | SEGMENT POLARITY PROTEIN DISHEVELLED |
Lsat_s052.g0015.t1 | |
Lsat_s052.g0016.t1 | |
Lsat_s052.g0017.t1 | |
Lsat_s052.g0018.t1 | RIBOSOMAL PROTEIN S6 KINASE |
Lsat_s052.g0019.t1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
Lsat_s052.g0020.t1 | SPERMIDINE/SPERMINE SYNTHASE |
Lsat_s052.g0021.t1 | |
Lsat_s052.g0022.t1 | |
Lsat_s052.g0023.t1 | GUANYLYL CYCLASE |
Lsat_s052.g0024.t1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
Lsat_s052.g0025.t1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |