Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s052.g0076.t1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Lsat_s052.g0077.t1 | ZINC FINGER PROTEIN |
Lsat_s052.g0078.t1 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
Lsat_s052.g0079.t1 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
Lsat_s052.g0080.t1 | |
Lsat_s052.g0081.t1 | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT |
Lsat_s052.g0082.t1 | CAPPUCCINO |
Lsat_s052.g0083.t1 | SUZ DOMAIN-CONTAINING PROTEIN 1 |
Lsat_s052.g0084.t1 | |
Lsat_s052.g0085.t1 | PROTEIN AF-9 HOMOLOG |
Lsat_s052.g0086.t1 | |
Lsat_s052.g0087.t1 | MACROGLOBULIN / COMPLEMENT |
Lsat_s052.g0088.t1 | MACROGLOBULIN / COMPLEMENT |
Lsat_s052.g0089.t1 | |
Lsat_s052.g0090.t1 | |
Lsat_s052.g0091.t1 | |
Lsat_s052.g0092.t1 | TMEM26 PROTEIN |
Lsat_s052.g0093.t1 | IMPACT-RELATED |
Lsat_s052.g0094.t1 | REGULATOR OF G-PROTEIN SIGNALING PROTEIN-LIKE |
Lsat_s052.g0095.t1 | |
Lsat_s052.g0096.t1 | |
Lsat_s052.g0097.t1 | |
Lsat_s052.g0098.t1 | |
Lsat_s052.g0099.t1 | |
Lsat_s052.g0100.t1 | ZINC FINGER PROTEIN |
Lsat_s052.g0101.t1 | SARCOSINE DEHYDROGENASE-RELATED |
Lsat_s052.g0102.t1 | FUMARATE REDUCTASE |
Lsat_s052.g0103.t1 | NF-KAPPA-B INHIBITOR ALPHA |
Lsat_s052.g0104.t1 | INHIBITOR OF GROWTH PROTEIN |
Lsat_s052.g0105.t1 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
Lsat_s052.g0106.t1 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA |
Lsat_s052.g0107.t1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Lsat_s052.g0108.t1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
Lsat_s052.g0109.t1 | RHOMBOID-RELATED PROTEIN |
Lsat_s052.g0110.t1 | UNCHARACTERIZED |
Lsat_s052.g0111.t1 | |
Lsat_s052.g0112.t1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
Lsat_s052.g0113.t1 | |
Lsat_s052.g0114.t1 | |
Lsat_s052.g0115.t1 | TRANSLOCATION PROTEIN SEC62 |
Lsat_s052.g0116.t1 | ADP RIBOSYLATION FACTOR-RELATED |
Lsat_s052.g0117.t1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
Lsat_s052.g0118.t1 | SOLUTE CARRIER FAMILY 2 |
Lsat_s052.g0119.t1 | |
Lsat_s052.g0120.t1 | TRANSMEMBRANE PROTEIN 201 |
Lsat_s052.g0121.t1 | PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
Lsat_s052.g0122.t1 | ARM REPEAT SUPERFAMILY PROTEIN |
Lsat_s052.g0123.t1 | VEZATIN |
Lsat_s052.g0124.t1 | SIGMA 1-TYPE OPIOID RECEPTOR-RELATED |
Lsat_s052.g0125.t1 |