About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08677-
Paelopatides08678-
Paelopatides08679-
Paelopatides08680-
Paelopatides08681LIPASE
Paelopatides086825-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides08683ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08685-
Paelopatides08686PYRUVATE KINASE
Paelopatides08687-
Paelopatides08688-
Paelopatides08689TUBULIN
Paelopatides08690TUBULIN
Paelopatides08691-
Paelopatides08692-
Paelopatides08693CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides08694SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED
Paelopatides08695HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Paelopatides08696HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides08697-
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